| cases |
display as controls |
publication |
method (brief) |
method |
samples |
description |
|
|
|
|
|
|
private data andrejgnip_mdx |
other |
NGS |
1 |
CNV1 |
|
|
|
private data tutorial |
CGH |
CGH |
1 |
DiGeorge |
|
|
|
Ahn et al. (2009) |
other |
Illumina DNA sequencing |
1 |
1 male Korean individual, SJK |
|
|
|
Altshuler et al. (2010) |
SNP Chip |
Affymetrix Human SNP array 6.0 and Illumina Human 1M BeadChip |
1184 |
1184 HapMap Individuals |
|
|
|
Bentley et al. (2008) |
other |
Illumina DNA sequencing |
1 |
1 male Yoruba individual from Ibadan Nigeria |
|
|
|
Conrad et al. (2005) |
other |
Mendelian inconsistencies |
450 |
450 HapMap Individuals |
|
|
|
Conrad et al. (2009) |
CGH |
NimbleGen custom 42M oligo array CGH |
450 |
450 HapMap Individuals |
|
|
|
Conrad et al. (2009) |
CGH |
Agilent custom oligo CGH array |
450 |
450 HapMap Individuals |
|
|
|
Cooper et al. (2008) |
SNP Chip |
Illumina Human 1M BeadChip |
126 |
126 control samples (HapMap) |
|
|
|
Cooper et al. (2008) |
SNP Chip |
Illumina Human 1M BeadChip |
9 |
9 control samples (Fosmid ESP Collection) |
|
|
|
Gusev et al. (2009) |
SNP Chip |
SNP genotyping analysis |
2906 |
2906 Islanders from Kosrae Micronesia |
|
|
|
Gusev et al. (2009) |
SNP Chip |
SNP genotyping analysis |
270 |
270 HapMap Individuals |
|
|
|
Hinds et al. (2005) |
other |
Oligo arrays |
24 |
24 control samples (Polymorphism Discovery Resource) |
|
|
|
Iafrate et al. (2004) |
CGH |
BAC Array CGH |
39 |
39 control samples |
|
|
|
Itsara et al. (2009) |
SNP Chip |
Illumina HumanHap300, Illumina HumanHap240S, Illumina HumanHap650Y, Illumina HumanHap550 BeadChips |
1064 |
1064 Individuals from HGDP + 790 control samples from NINDS study |
|
|
|
Jakobsson et al. (2008) |
SNP Chip |
Illumina HumanHap550 BeadChip |
485 |
485 control samples (Human Genome Diversity Panel) |
|
|
|
Ju et al. (2010) |
other |
Illumina Genome Analyzer IIx |
1 |
1 control CEU HapMap sample |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
ABC10_Yoruba |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA18507, YRI) |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA12156, CEPH) |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA18517, YRI) |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA19129, YRI) |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA15510) |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA18956, Japan) |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA12878, CEPH) |
|
|
|
Kidd et al. (2008) |
other |
Paired End Mapping |
1 |
1 control sample (NA18555, China) |
|
|
|
Kim et al. (2009) |
other |
Paired End Mapping |
1 |
1 male Korean individual, AK1 |
|
|
|
Kim et al. (2009) |
CGH |
Aglient 24M aCGH |
1 |
1 male Korean individual, AK1 |
|
|
|
Kim et al. (2009) |
SNP Chip |
Illumina 370k BeadChip |
1 |
1 male Korean individual, AK1 |
|
|
|
Kim et al. (2009) |
SNP Chip |
Illumina 610k BeadChip |
1 |
1 male Korean individual, AK1 |
|
|
|
Kim et al. (2009) |
other |
BAC End Sequencing |
1 |
1 male Korean individual, AK1 |
|
|
|
Korbel et al. (2007) |
other |
Paired End Mapping |
2 |
2 control samples (NA18505 and NA15510) |
|
|
|
Levy et al. (2007) |
CGH/SNP Chip |
Affymetrix 500K SNP Mapping Array/Agilent 244k CGH Arrays/Illumina HumanHap650Y BeadChip |
1 |
1 control sample (HuRef) |
|
|
|
Levy et al. (2007) |
CGH/SNP Chip |
Affymetrix 500K SNP Mapping Array/Agilent 244k CGH Arrays |
1 |
1 control sample (HuRef) |
|
|
|
Levy et al. (2007) |
CGH |
Agilent 244k CGH Arrays |
1 |
1 control sample (HuRef) |
|
|
|
Levy et al. (2007) |
other |
Sequencing |
1 |
1 control sample (HuRef) |
|
|
|
Levy et al. (2007) |
SNP Chip |
Illumina HumanHap650Y BeadChip |
1 |
1 control sample (HuRef) |
|
|
|
Levy et al. (2007) |
SNP Chip |
Affymetrix 500K SNP Mapping Array |
1 |
1 control sample (HuRef) |
|
|
|
Locke et al. (2006) |
CGH |
BAC Array CGH |
269 |
269 control samples (HapMap) |
|
|
|
Matsuzaki et al. (2009) |
other |
Custom Affymetrix oligonucleotide arrays |
90 |
90 Yoruban Individuals for Ibadan Nigeria |
|
|
|
McCarroll et al. (2008) |
SNP Chip |
Affymetrix SNP 6.0 Array |
270 |
270 HapMap Individuals |
|
|
|
McKernan et al. (2009) |
other |
ABI SOLiD Sequencing |
1 |
1 male Yoruban Individual from Ibadan Nigeria |
|
|
|
Mills et al. (2006) |
other |
Sequence trace read mapping |
36 |
36 control samples |
|
|
|
Pang et al. (2010) |
other |
Paired End Mapping |
1 |
1 control sample (J. Craig Venter) |
|
|
|
Pang et al. (2010) |
other |
Sequence trace read mapping |
1 |
1 control sample (J. Craig Venter) |
|
|
|
Pang et al. (2010) |
SNP Chip |
Affymetrix SNP 6.0 Array |
1 |
1 control sample (J. Craig Venter) |
|
|
|
Pang et al. (2010) |
SNP Chip |
Illumina Human 1M BeadChip |
1 |
1 control sample (J. Craig Venter) |
|
|
|
Pang et al. (2010) |
CGH |
Custom NimbleGen 42M aCGH |
1 |
1 control sample (J. Craig Venter) |
|
|
|
Pang et al. (2010) |
CGH |
Custom Agilent 24M aCGH |
1 |
1 control sample (J. Craig Venter) |
|
|
|
Park et al. (2010) |
CGH |
Custom Agilent 24M oligonucleotide CGH array |
30 |
30 Asian Individuals (10 Koreans (KOR), 10 HapMap Chinese (CHB) and 10 HapMap Japanese (JPT) individuals) |
|
|
|
Perry et al. (2008) |
CGH |
Agilent Custom CGH Arrays |
30 |
30 control samples (HapMap) |
|
|
|
Pinto et al. (2007) |
SNP Chip |
Affymetrix 500K SNP Mapping Array |
776 |
776 control samples (506 Germans, 270 HapMap) |
|
|
|
Redon et al. (2006) |
SNP Chip |
Affymetrix 500K EA SNP Mapping Array |
270 |
270 control samples (HapMap) |
|
|
|
Sebat et al. (2004) |
ROMA |
ROMA |
20 |
20 control samples |
|
|
|
Shaikh et al. (2009) |
SNP Chip |
Illumina HumanHap550 V1 BeadChip |
2026 |
2,026 healthy controls |
|
|
|
Sharp et al. (2005) |
CGH |
BAC Array CGH |
47 |
47 control samples (8 Chinese, 4 Japanese, 10 Czech, 2 Druze, 7 Biaka, 9 Mbuti, 7 American Indian) |
|
|
|
Simon-Sanchez et al. (2007) |
SNP Chip |
Illumina HumanHap300 BeadChip |
272 |
272 control samples |
|
|
|
Tuzun et al. (2005) |
other |
Paired End Mapping/Sequencing/PCR |
55 |
55 control samples |
|
|
|
Tuzun et al. (2005) |
other |
Paired End Mapping/Sequencing |
1 |
1 control sample (NA15510) |
|
|
|
Tuzun et al. (2005) |
other |
Paired End Mapping |
1 |
1 control sample (NA15510) |
|
|
|
Wang et al. (2007) |
SNP Chip |
Illumina HumanHap550 BeadChip |
112 |
112 control samples (HapMap) |
|
|
|
Wang et al. (2008) |
other |
Illumina DNA sequencing |
1 |
1 male Han Chinese individual |
|
|
|
Wheeler et al. (2008) |
other |
Sequencing |
1 |
1 control sample (JD_Watson) |
|
|
|
Wheeler et al. (2008) |
CGH |
Agilent 244k CGH Arrays |
1 |
1 control sample (JD_Watson) |
|
|
|
Wong et al. (2007) |
CGH |
BAC Array CGH |
95 |
95 control samples |
|
|
|
Young et al. (2008) |
other |
MLPA |
51 |
51 control samples |
|
|
|
Young et al. (2008) |
other |
MLPA/PCR |
51 |
51 control samples |
|
|
|
Young et al. (2008) |
other |
PCR |
51 |
51 control samples |
|
|
|
Zogopoulos et al. (2007) |
SNP Chip |
Affymetrix 500K and 100K SNP Mapping Arrays |
1190 |
1190 control samples (Ontario, Canada) |
|
|
|
de Smith et al. (2007) |
CGH |
Agilent 185k CGH Arrays/Agilent Custom CGH Arrays |
50 |
50 control samples (French) |